Skeptophilia (skep-to-fil-i-a) (n.) - the love of logical thought, skepticism, and thinking critically. Being an exploration of the applications of skeptical thinking to the world at large, with periodic excursions into linguistics, music, politics, cryptozoology, and why people keep seeing the face of Jesus on grilled cheese sandwiches.
Showing posts with label scientific fraud. Show all posts
Showing posts with label scientific fraud. Show all posts

Friday, July 29, 2022

The cost of fraud

My Aunt Florence, my mother's older sister, died of Alzheimer's disease.

Her children, especially my cousin Linda, took care of her as she slowly declined during the last fifteen years of her life.  She finally died in 2008 at the age of ninety, and by that time there was little left of her but a physical shell.  She was unresponsive, the higher parts of her brain destroyed by the agonizing progression of this horrible illness.  She went from being a bright, inquisitive, vital woman, an avid reader who did crossword puzzles in ink and could beat the hell out of me in Scrabble, to being... gone.

My Aunt and Uncle in better times

During this ordeal I lived fifteen hundred miles away, so I wasn't confronted every day by the terrible reality of what Alzheimer's does, both to the people suffering it and to their families.  Even so, it was my aunt's face I kept picturing while I was reading an article in Neoscope sent to me by a friend -- all the while getting angrier and angrier.

If you've kept up at all with the research on Alzheimer's you probably are familiar with the words beta amyloid.  It's a short-chain protein, whose function is unknown, which allegedly is directly toxic to nerve cells (and can cause other proteins to misfold, suggesting an etiology similar to Creutzfeld-Jakob syndrome, better known as "mad cow disease").  A great deal of money and time has been spent investigating the role of beta amyloid in Alzheimer's, and in developing drugs that interfere with its production -- significantly, not a single one of which has been shown to slow down the progression of the disease, much less reverse it.

It turns out this is no coincidence.  There is good evidence that the often-cited papers on the topic by Sylvain Lesné -- who wrote convincingly that a specific beta amyloid species, Aß*56, was the culprit in the devastating destruction you see in Alzheimer's sufferers -- were based on faked data.

Not even well-faked, either.  The images Lesné included from "Western blot" experiments, a commonly-used separation technique used to detect specific proteins in mixtures, were cut-and-pasted, something that can be seen not only in faint cut lines in the images but in the fact that the bands in the photographs have clearly been duplicated and moved (i.e., if you look at the edges of the bands, several of them have identically-shaped edges -- something that would be next to impossible in an actual Western blot).

It's a devastating finding.  About how the hell fraud like this got past peer review, biochemist Derek Lowe writes in Science:

The Lesné stuff should have been caught at the publication stage, but you can say that about every faked paper and every jiggered Western blot.  When I review a paper, I freely admit that I am generally not thinking “What if all of this is based on lies and fakery?”  It’s not the way that we tend to approach scientific manuscripts.  Rather, you ask whether the hypothesis is a sound one and if it was tested in a useful way: were the procedures used sufficient to trust the results and were these results good enough to draw conclusions that can in turn be built upon by further research?  Are there other experiments that would make things stronger?  Other explanations that the authors didn’t consider and should address?  Are there any parts where the story doesn’t hang together?  If so, how would these best be fixed?

There is a good-faith assumption behind all these questions: you are starting by accepting the results as shown.  But if someone comes in with data that have in fact been outright faked, and what’s more, faked in such a way as to answer or forestall just those sorts of reviewing tasks, there’s a good chance that these things will go through, unfortunately.
Lesné's apparently fraudulent research doesn't invalidate the whole beta amyloid hypothesis; other, independent studies support the toxic effects of beta amyloid on nerve cells, and have shown there's beta amyloid present in damaged cells.  But Lesné's contention that Aß*56 was causative of Alzheimer's was apparently a blind alley -- and the presence of the protein in the neurons of Alzheimer's sufferers could as well be a result of the disease as a cause.

What concerns me about this kind of thing, though, is the damage it does to the scientific enterprise as a whole.  Here in the United States, in the last twenty years, we've been dealing with the effects of a surge of anti-science propaganda on a number of fronts, most notably anthropogenic climate change and the efficacy of vaccines.  When highly cited, widely publicized work like Lesné's is shown to be based on fraudulent data, it gives more ammunition to the crowd who is already shrieking about how the scientists are making it all up to get grant money and are fundamentally untrustworthy.

And as my friend who sent me the link pointed out, there is a profit motive involved in science.  The publish-or-perish model of scientific research means that the competition for grant money is intense and often cutthroat.  Producing publishable results doesn't just get you funded, it is also the key to tenure-track research positions and the stability and prestige that come with them.  Don't get me wrong, I still strongly believe that 99% of scientists are rigorously ethical, and the vast majority of research is reliable; but when you set the system up to punish negative results, it gives the unscrupulous a hell of an incentive to cheat, and the naysayers yet another opportunity to tar all scientists with one brush.

But what haunts me most in this case is the human cost.  This disease destroys lives, and does it in a slow, agonizing, dehumanizing way.  The idea that falsified data may have led researchers down a fruitless rabbit hole, wasting huge amounts of time and money while people suffered and died, is horrifying.  I keep picturing my Aunt Florence's face, as she languished for years, her brain decaying while her body lived on, and wonder how the people who perpetrate such fraud can sleep at night.

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Wednesday, August 25, 2021

The honesty researcher

One of the things I pride myself on is honesty.

I'm not trying to say I'm some kind of paragon of virtue, but I do try to tell the truth in a direct fashion.  I hope it's counterbalanced by kindness -- that I don't broadcast a hurtful opinion and excuse it by saying "I'm just being honest" -- but if someone wants to know what I think, I'll tell 'em.

As the wonderful poet and teacher Taylor Mali put it, "I have a policy about honesty and ass-kicking.  Which is: if you ask for it, I have to let you have it."  (And if you haven't heard his wonderful piece "What Teachers Make," from which that quote was taken -- sit for three minutes right now and watch it.)


I think it's that commitment to the truth that first attracted me to science.  I was well aware from quite a young age that there was no reason to equate an idea making me happy and an idea being the truth.  It was as hard for me to give up magical thinking as the next guy -- I spent a good percentage of my teenage years noodling around with Tarot cards and Ouija boards and the like -- but eventually I had to admit to myself that it was all a bunch of nonsense.

In science, honesty is absolutely paramount.  It's about data and evidence, not about what you'd dearly love to be true.  As the eminent science fiction author Phillip K. Dick put it, "Reality is that which, when you stop believing in it, it doesn't go away."

Or perhaps I should put it, "it should be about data and evidence."  Scientists are human, and are subject to the same temptations the rest of us are -- but they damn well better be above-average at resisting them.  Because once you've let go of that touchstone, it not only calls into question your own veracity, it casts a harsh light on the scientific enterprise as a whole.

And to me, that's damn near unforgivable.  Especially given the anti-science attitude that is currently so prevalent in the United States.  We don't need anyone or anything giving more ammunition to the people who think the scientists are lying to us for their own malign purposes -- the people whom, to quote the great Isaac Asimov, think "my ignorance is as good as your knowledge."

Which brings me to Dan Ariely.

Ariely is a psychological researcher at Duke University, and made a name for himself studying the issue of honesty.  I was really impressed with him and his research, which looked at how our awareness of the honor of truth-telling affects our behavior, and the role of group identification and tribalism in how much we're willing to bend our own personal morality.  I used to show his TED Talk, "Our Buggy Moral Code," to my Critical Thinking classes at the beginning of the unit on ethics; his conclusions seemed to be a fascinating lens on the whole issue of honesty and when we decide to abandon it.

Which is more than a little ironic, because the data Ariely used to support these conclusions appear to have been faked -- possibly by Ariely himself.

[Image licensed under the Creative Commons Yael Zur, for Tel Aviv University Alumni Organization, Dan Ariely January 2019, CC BY-SA 4.0]

Ariely has not admitted any wrongdoing, but has agreed to retract the seminal paper on the topic, which appeared in the prestigious journal Proceedings of the National Academy of Sciences back in 2012.  "I can see why it is tempting to think that I had something to do with creating the data in a fraudulent way," Ariely said, in a statement to BuzzFeed News.  "I can see why it would be tempting to jump to that conclusion, but I didn’t...  If I knew that the data was fraudulent, I would have never posted it."

His contention is that the insurance company that provided the data, The Hartford, might have given him fabricated (or at least error-filled) data, although what their motivation could be for doing so is uncertain at best.  There's also the problem that the discrepancies in the 2012 paper led analysts to sift through his other publications, and found a troubling pattern of sloppy data-handling, failures in replicability of results, misleading claims about sources, and more possible outright falsification.  (Check out the link I posted above for a detailed overview of the issues with Ariely's work.)

Seems like the one common thread running through all of these allegations is Ariely.

It can be very difficult to prove scientific fraud.  If a researcher deliberately fabricated data to support his/her claims, how can you prove that it was deliberate, and not either (1) an honest mistake, or (2) simply bad experimental design (which isn't anything to brag about, but is still in a separate class of sins from outright lying).  Every once in a while, an accused scientist will actually admit it -- one example that jumps to mind is Korean stem-cell researcher Hwang Woo-Suk, whose spectacular fall from grace reads like a Shakespearean tragedy -- but like many politicians who are accused of malfeasance, a lot of times the accused scientist just decides to double down, deny everything, and soldier on, figuring that the storm will eventually blow over.

And, sadly, it usually does.  Even in Hwang's case -- not only did he admit fraud, he was fired by Seoul National University and tried and found guilty of embezzlement -- he's back doing stem-cell research, and since his conviction has published a number of papers, including ones in PubMed.

I don't know what's going to come of Ariely's case.  Much is being made about the fact that a researcher in honesty and morality has been accused of being dishonest and immoral.  Ironic as this is, the larger problem is that this sort of thing scuffs the reputation of the scientific endeavor as a whole.  The specific results of Ariely's research aren't that important; what is much more critical is that this sort of thing makes laypeople cast a wry eye on the entire enterprise.

And that, to me, is absolutely inexcusable.

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I've been interested for a long while in creativity -- where it comes from, why different people choose different sorts of creative outlets, and where we find our inspiration.  Like a lot of people who are creative, I find my creative output -- and my confidence -- ebbs and flows.  I'll have periods where I'm writing every day and the ideas are coming hard and fast, and times when it seems like even opening up my work-in-progress is a depressing prospect.

Naturally, most of us would love to enhance the former and minimize the latter.  This is the topic of the wonderful book Think Like an Artist, by British author (and former director of the Tate Gallery) Will Gompertz.  He draws his examples mostly from the visual arts -- his main area of expertise -- but overtly states that the same principles of creativity apply equally well to musicians, writers, dancers, and all of the other kinds of creative humans out there. 

And he also makes a powerful point that all of us are creative humans, provided we can get out of our own way.  People who (for example) would love to be able to draw but say they can't do it, Gompertz claims, need not to change their goals but to change their approach.

It's an inspiring book, and one which I will certainly return to the next time I'm in one of those creative dry spells.  And I highly recommend it to all of you who aspire to express yourself creatively -- even if you feel like you don't know how.

[Note: if you purchase this book using the image/link below, part of the proceeds goes to support Skeptophilia!]


Saturday, June 16, 2018

Illuminating a prison

In the unit on ethics in my Critical Thinking class, we always discuss a variety of experiments that have been done to elucidate the origins, characteristics, and extent of human morality.  Among the ones we look at are:
  • Philippa Foot's famous "Trolly Problem" experiment (1967), where a person is presented with two scenarios, both of which result in one death to save five people -- but in one, the death is caused by an action with a mechanical intermediary (flipping a switch), while in the second, the death is caused by the person shoving someone off a bridge with their own hands.  The interesting result is that humans don't view these as equivalent -- having a mechanical intermediary far reduces the emotional charge of the situation, and makes people much more likely to do it, even though the outcomes are identical.
  • The "Milgram experiment," conducted in 1963 by Stanley Milgram, which looked at the likelihood of someone hurting another person if commanded to do so by an authority figure.  Turns out, most of us will...
  • The Zurich tribalism experiment, done in Switzerland in 2015, wherein we find test subjects are willing to inflict painful shocks on others without activating their own empathy centers -- if the person being shocked is wearing a soccer jersey of a team the test subject didn't like.
  • Karen Wynn's "baby lab" experiment (2014), which found that even very young babies have an innate perception of fairness and morality, and want helpful individuals rewarded and unhelpful individuals punished.
The last time I taught the class, I included a fifth experiment -- the notorious "Stanford prison experiment," done by Philip Zimbardo in 1971.  You've probably heard about this one; it involved 24 Stanford students who had all undergone personality screening to weed out anyone with a tendency toward sociopathy.  The 24 were split into two groups -- the "prisoners" and the "guards."  As Zimbardo recounted the outcome, the guards very quickly banded together and acted with cruelty and disdain toward the prisoners, and the prisoners responded by sabotaging whatever they could.  Several of the prisoners broke down completely, and the experiment had to be called off because some of the prisoners were obviously in such mental distress that it would have been inhumane to continue.

Sing Sing Prison, 1915 [Image is in the Public Domain]

Zimbardo became famous instantly, and his results used to explain everything from people who'd been collaborators during the Holocaust to William Calley and his men and the perpetration of the My Lai Massacre.  When banding together against a perceived common enemy, Zimbardo said, we'll be much more likely to behave immorally -- especially when (as the Milgram experiment suggests) we're being ordered to behave that way by an authority.

There are two problems with this.

First, in 2001, psychologists Alex Haslam and Stephen Reicher tried to replicate Zimbardo's results, and found that it didn't work.  What they suggested was that the outcome of the Stanford prison experiment weren't because the "guards" saw the "prisoners" as enemies, but because the guards were identifying with the experimenters -- in other words, their activities were being directed by an authority figure.  So the experiment boils down to a rehash of what Milgram did eight years earlier.

But there's a darker side of this, which I just found out about in an article in Medium by Ben Blum called "The Lifespan of a Lie."  In it, Blum makes a disturbing claim; that Zimbardo hadn't done what he claimed, which was to break the students into groups randomly and give them no instructions other than "guards control prisoners, prisoners obey guards;" he had actually coached the guards to behave cruelly -- and may have even encouraged one of the prisoners to go into hysterics.

The most famous breakdown, that of "prisoner" Doug Korpi, was dramatic -- he was locked in a closet by a guard, and proceeded to have a complete meltdown, screaming and crying and kicking the door.  The problem, Korpi says, is that it was all an act, and both he and Zimbardo knew it.  "Anybody who is a clinician would know that I was faking,” Korpi told Blum.  "If you listen to the tape, it’s not subtle.  I’m not that good at acting.  I mean, I think I do a fairly good job, but I’m more hysterical than psychotic."

At least some of the guards were acting as well.  One of the ones that had (according to Zimbardo) exhibited true cruelty toward the prisoners, Dave Eshelman, said his whole persona was a put-on.  "I took it as a kind of an improv exercise,” Eshelman told Blum.  "I believed that I was doing what the researchers wanted me to do, and I thought I’d do it better than anybody else by creating this despicable guard persona.  I’d never been to the South, but I used a southern accent, which I got from Cool Hand Luke."

Zimbardo, of course, denies all of this, and spoke to Blum briefly -- mostly to say that the experiment was fine, and the claims of fraud all nonsense.  Instead, he said that Haslam and Reicher's failed attempt at replication was "fraudulent," and the experiment itself valid.  "It’s the most famous study in the history of psychology at this point," Zimbardo told Blum.  "There’s no study that people talk about fifty years later.  Ordinary people know about it.  They say, ‘What do you do?’ ‘I’m a psychologist.’  It could be a cab driver in Budapest.  It could be a restaurant owner in Poland.  I mention I’m a psychologist, and they say, ‘Did you hear about the study?’  It’s got a life of its own now.  If he wants to say it was all a hoax, that’s up to him.  I’m not going to defend it anymore.  The defense is its longevity."

Which, of course, is not much of a defense.  Some really stupid ideas (I'm lookin' at you, homeopathy) have been around for ages.  I do find it rather upsetting, though, and not just because I've been teaching an experiment for years that turns out not to have gone down the way the researchers claimed.  It's a stain on science as a whole -- that we accepted the results of an experiment that failed replication, mostly because its outcome seemed so comforting.  People aren't inherently immoral; they act immorally when they're placed in situations where it's expected.  Alter situations, it implied, and people will rise to higher motives.

Well, maybe.  There are still a lot of questions about morality, and the other four experiments I teach have borne up to scrutiny.  We do harm more easily when we're one step removed from the person being harmed, when an authority figure tells us to, when the harmed person doesn't belong to our "tribe," and when the recipient of punishment is perceived to have deserved it.  But simply banding together, Lord of the Flies-style, to visit harm upon the helpless -- the evidence for that is far slimmer.

And I suppose the Zimbardo experiment will have to be transferred to a different lecture next year -- the one I do on examples of scientific fraud and researcher malfeasance.

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This week's Skeptophilia book recommendation is a classic: the late Oliver Sacks's The Man Who Mistook His Wife for a Hat.  It's required reading for anyone who is interested in the inner workings of the human mind, and highlights how fragile our perceptual apparatus is -- and how even minor changes in our nervous systems can result in our interacting with the world in what appear from the outside to be completely bizarre ways.  Broken up into short vignettes about actual patients Sacks worked with, it's a quick and completely fascinating read.





Tuesday, February 27, 2018

A vote for fraud

Yesterday morning when I was reading the news, I saw a story that induced me to use say some very bad words, that for the benefit of my more sensitive readers I will leave to your imagination.

The story that generated that result appeared in The Guardian, and the gist is that disgraced British doctor and anti-vaxxer Andrew Wakefield is campaigning hard for an anti-vaxxer running for the Republican nomination for a seat in the Texas State House of Representatives.

Wakefield, you may remember, is the man who is virtually solely responsible for the completely unfounded claim that there is a link between vaccines and autism.  The British Medical Journal posted an editorial in 2011 that did not mince words; the title is, "Wakefield’s Article Linking MMR Vaccine and Autism Was Fraudulent."  If that's not unequivocal enough, the editorial begins with the line, "Clear evidence of falsification of data should now close the door on this damaging vaccine scare."

That should have been that.  That would have been that if it weren't for the fact that being caught red-handed engaging in scientific fraud didn't induce Wakefield to do what a normal human being would do in that situation, namely to admit what he'd done and retreat in disarray.  No, after the release of the paper calling him out on his fraudulent pseudo-research, Wakefield and his followers denied it -- and claimed that the doctors who wrote the paper were shills being paid by Big Pharma (which is up there with Monsanto as a stand-in for Satan) to shut down his research to protect their profits.

And the anti-vaxxer movement is still growing.  As is recurrence of dangerous and completely preventable diseases, such as the measles outbreak that happened in Wakefield's adopted home state of Texas this January.  But Wakefield evidently decided that this wasn't damage on a sufficiently large scale, so he's trying to ramrod his foolish and discredited ideas into the state legislature, so he can enshrine his false claims into law.

[image courtesy of the Wikimedia Commons]

Wakefield is completely up front on what he's trying to do, and how he's trying to do it.  Rather than believe the scientists and the peer-reviewed studies, he says, you should trust social media instead:
Social media has evolved, as a general comment, has evolved beautifully.  It has provided an alternative to the failings of mainstream media...  In this country, it’s become so polarized now… No one knows quite what to believe.  So, people are turning increasingly to social media.
To say this makes me furious is something of an understatement.  Distrust of intellectuals in general and scientists in particular is widespread, and that is reflected in the people we've elected.  We already have a president who is a climate change denier and more than one governor and congressperson who believe that the six-day biblical creation story is supported by science and therefore should be taught in public school classrooms.  The last thing we need is more people in positions of power who deny science in favor of their own biases and/or delusions -- and who rely on getting their information from Facebook and Twitter.

Jinny Suh, an Austin mom and activist who is attempting to counter Wakefield's message, highlights how difficult this approach is to fight.  "The biggest challenge we face is," Suh said, "if you go onto Facebook or Google and you do a search for vaccines – and we can imagine a lot of new moms do this… the anti-vaxx stuff out there outnumbers the pro-vaxx stuff by quite a bit.  It doesn’t matter how you started out thinking about the topic, when a person is inundated with that much misinformation a person can’t help but start to think it’s true."

Which is why it's so important to get the message out there, and speak plainly.  Wakefield is a proven fraud.  He continues to lie about this and to claim that the evidence against him was falsified or cherry-picked or means something other than it does.  There is zero evidence that vaccination causes autism or any of the other horrible side-effects that he and others like him claim.  Admittedly, there have been side-effects from vaccines; no medical treatment is completely risk-free.  But they are extremely infrequent, usually mild, and temporary.

And what you get in exchange is immunity against diseases that as little as 75 years ago, used to kill huge numbers of children and young adults.  I've related before that my paternal grandfather's two eldest sisters -- Aimée-Marie and Anne-Désée -- died at the ages of 21 and 18, respectively, of complications from measles, after being completely healthy up until that time.

Wakefield is not just wrong, he's dangerous.  We do not need more anti-science voices amongst our leaders.  I don't know what the chances are for his candidate to win the nomination, but I fear that this kind of unfounded rhetoric has still not reached its peak.