Skeptophilia (skep-to-fil-i-a) (n.) - the love of logical thought, skepticism, and thinking critically. Being an exploration of the applications of skeptical thinking to the world at large, with periodic excursions into linguistics, music, politics, cryptozoology, and why people keep seeing the face of Jesus on grilled cheese sandwiches.
Showing posts with label human genetic origins. Show all posts
Showing posts with label human genetic origins. Show all posts

Friday, November 30, 2018

Escapees from Siberia

As you might expect from someone who is passionately interested in both genealogy and evolutionary genetics, when there's a study that combines both, it's a source of great joy to me.

This week, Nature published a study on the evolutionary history of humans in northern Europe, specifically the Finns.  Entitled, "Ancient Fennoscandian Genomes Reveal Origin and Spread of Siberian Ancestry in Europe," it was authored by no less than seventeen researchers (including Svante Pääbo, a Swedish biologist who is widely credited as founding the entire science of paleogenetics) from the Max Planck Institute, the University of Helsinki, the Russian Academy of Sciences, the Vavilov Institute for General Genetics, and the University of Turku.

Quite a collaborative effort.

It's been known for a while that Europe was populated in three broad waves of settlement.  First, there were hunter-gatherers who came in as early as 40,000 years ago, and proceeded not only to hunt and gather but to have lots of hot caveperson-on-caveperson sex with the pre-existing Neanderthals, whose genetic traces can be discerned in their descendants unto this very day.  Then, there was an agricultural society that came into Europe from what is now Turkey starting around 8,000 years ago.  Finally, some nomadic groups -- believed to be the ancestors of both the Scythians and the Celts -- swept across Europe around 4,500 years ago.

Anyone with European ancestry has all three.  Despite the genetic distinctness of different ethnic groups -- without which 23 & Me genetic analysis wouldn't work at all -- there's been enough time, mixture, and cross-breeding between the groups that no one has ancestry purely from one population or another.

Which, as an aside, is one of the many reasons that the whole "racial purity" crowd is so ridiculous.  We're all mixtures, however uniform you think your ethnic heritage is.  Besides, racial purity wouldn't a good thing even if it were possible; that's called inbreeding, and causes a high rate of homozygosity (put simply, you're likely to inherit the same alleles from both your mother and father).  This causes lethal recessives to rear their ugly heads; heterozygous individuals are protected from these because the presence of the recessive allele is masked by the other, dominant (working) copy.  It's why genetic disorders can be localized to different groups; cystic fibrosis in northern Europeans, Huntington's disease in people whose ancestry comes from eastern England, sickle-cell anemia from sub-Saharan Africa, Tay-Sachs disease in Ashkenazic Jews, and so on.

So mixed-ethnic relationships are more likely to produce genetically healthy children.  Take that, neo-Nazis.

Map of ethnic groups in Europe, ca. 1899 [Image is in the Public Domain]

In any case, the current paper looks at the subset of Europeans who have a fourth ancestral population -- people in northeastern Europe, including Finns, the Saami, Russians, the Chuvash, Estonians, and Hungarians.  And they found that the origin of this additional group of ancestors is all the way from Siberia!

The authors write:
[T]he genetic makeup of northern Europe was shaped by migrations from Siberia that began at least 3500 years ago.  This Siberian ancestry was subsequently admixed into many modern populations in the region, particularly into populations speaking Uralic languages today.  Additionally... [the] ancestors of modern Saami inhabited a larger territory during the Iron Age.
The coolest part is that this lines up brilliantly with what we know about languages spoken in the area:
The Finno-Ugric branch of the Uralic language family, to which both Saami and Finnish languages belong, has diverged from other Uralic languages no earlier than 4000–5000 years ago, when Finland was already inhabited by speakers of a language today unknown.  Linguistic evidence shows that Saami languages were spoken in Finland prior to the arrival of the early Finnish language and have dominated the whole of the Finnish region before 1000 CE.  Particularly, southern Ostrobothnia, where Levänluhta is located, has been suggested through place names to harbour a southern Saami dialect until the late first millennium, when early Finnish took over as the dominant language.  Historical sources note Lapps living in the parishes of central Finland still in the 1500s.  It is, however, unclear whether all of them spoke Saami, or if some of them were Finns who had changed their subsistence strategy from agriculture to hunting and fishing.  There are also documents of intermarriage, although many of the indigenous people retreated to the north...  Ancestors of present-day Finnish speakers possibly migrated from northern Estonia, to which Finns still remain linguistically close, and displaced but also admixed with the local population of Finland, the likely ancestors of today’s Saami speakers.
Which I think is pretty damn cool.  The idea that we can use the genetics and linguistics of people today, and use it to infer migratory patterns back 40,000 years, is nothing short of stunning.

Unfortunately, however, I have zero ancestry in Finland or any of the other areas the researchers were studying.  According to 23 & Me, my presumed French, Scottish, Dutch, German, and English ancestry was shown to be... French, Scottish, Dutch, German, and English.  No surprise admixtures of genetic information from some infidelity by my great-great-grandmother with a guy from Japan, or anything.

On the other hand, I did have 284 markers associated with Neanderthal ancestry.  Probably explaining why I like my steaks medium-rare and run around more or less naked when the weather's warm.  Which I suppose makes up for my lack of unexpected ethnic heritage.

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Ever wonder why we evolved to have muscles that can only pull, not push?  How about why the proportions of an animals' legs change as you look at progressively larger and larger species -- why, in other words, insects can get by with skinny little legs, while elephants need the equivalent of Grecian marble columns?  Why there are dozens of different takes on locomotion in the animal world, but no animal has ever evolved wheels?

If so, you need to read Steven Vogel's brilliant book Cats' Paws and Catapults.  Vogel is a bioengineer -- he looks at the mechanical engineering of animals, analyzing how things move, support their weight, and resist such catastrophes as cracking, buckling, crumbling, or breaking.  It's a delightful read, only skirting some of the more technical details (almost no math needed to understand his main points), and will give you a new perspective on the various solutions that natural selection has happened upon in the 4-billion-odd years life's been around on planet Earth.

[If you purchase the book from Amazon using the image/link below, part of the proceeds goes to supporting Skeptophilia!]






Friday, April 17, 2015

All in the family

Racists have cast about for years for some sort of scientific basis for their horrible worldview.  Evidence that their race is the superior one in intelligence, physical strength, or vigor, or simply support for their contention that interracial marriages are bad in a biological sense.

Of course, the problem for people who turn to science is that science often provides answers whether you end up liking them or not.  And inquiries into a biological basis for race have shown that any real genetic variations between different ethnic groups are tenuous at best.  Luigi Luca Cavalli-Sforza, one of the leading specialists in human population genetics, says:
Human races are still extremely unstable entities in the bands of modern taxonomists…  As one goes down the scale of the taxonomic hierarchy toward the lower and lower partitions, the boundaries between clusters become even less clear.  There is great genetic variation in all populations, even in small ones. 
From a scientific point of view, the concept of race has failed to obtain any consensus… the major stereotypes, all based on skin color, hair color and form, and facial traits, reflect superficial differences that are not confirmed by deeper analysis with more reliable genetic traits and whose origin dates from recent evolution mostly under the effect of climate and perhaps sexual selection.
Now, let me make it clear that this doesn't mean that there are no differences between racial groups.  It's just that those differences are primarily social and cultural, not biological, which neatly kicks the legs out from underneath some of the racists' primary arguments.

[image courtesy of the Wikimedia Commons]

And it's been known for years that lumping together all dark-skinned Africans as "black" is ignoring the fact that there's more genetic variability on the African continent than there is in the entire rest of the world put together.  The Zulu and the !Kung people of southern Africa, for example, are more distantly related to each other than a typical white American is...

... to a person from Japan.

And just last month, Iain Mathieson of Harvard University punched another hole in racist genetics when he released his research team's findings that the genes for white skin are only about 8,000 years old.

According to Mathieson et al.:
(M)odern humans who came out of Africa to originally settle Europe about 40,000 years are presumed to have had dark skin, which is advantageous in sunny latitudes.  And the new data confirm that about 8500 years ago, early hunter-gatherers in Spain, Luxembourg, and Hungary also had darker skin:  They lacked versions of two genes—SLC24A5 and SLC45A2—that lead to depigmentation and, therefore, pale skin in Europeans today... 
Then, the first farmers from the Near East arrived in Europe; they carried both genes for light skin. As they interbred with the indigenous hunter-gatherers, one of their light-skin genes swept through Europe, so that central and southern Europeans also began to have lighter skin.  The other gene variant, SLC45A2, was at low levels until about 5800 years ago when it swept up to high frequency.
The reason the two light-skin genes took hold in northern latitudes is thought to be vitamin D synthesis -- while having dark skin is an advantage in equatorial regions, from the standpoint of protection from ultraviolet skin damage, dark skin inhibits endogenous vitamin D production in areas with low incident sunlight.  So once the mutations occurred, they spread rapidly, but only in regions at high latitude.  This explains why even distantly-related equatorial groups have dark skin (such as the Bantu and the Australian Aborigines), and even distantly-related high-latitude group have light skin (such as the Swedes and the Inuit).

And apparently the gene for blue eyes is of equally recent vintage.  The earliest genetic evidence for the gene HERC2/OCA2, which causes blue eyes, is in southern Sweden from about 7,700 years ago.  The gene's provenance might date back to 10,000 years ago, but certainly not much before that.

So all of us descend from dark-skinned, brown-eyed people.  Sorry, white supremacists.

Of course, given that there is good evidence that around 70,000 years ago, an eruption of the Toba Volcano in Indonesia caused climate shifts that killed nearly all of our ancestors -- best estimates are that there were only 10,000 humans left on Earth after the bottleneck occurred -- we're all cousins anyway.  After that event, those 10,000-odd survivors can be put into two groups; the ones who left no descendants at all, and the ones who are the ancestors of everyone on Earth.

It'd be nice if we could count on people using science to inform their behavior, but we don't have a very good track record in that regard, do we?  I mean, think about it; we're still pushing the fossil fuel industry as the world warms up and the climate destabilizes around us.  So unfortunately, even when we have direct and incontrovertible evidence that what we're doing isn't reasonable, we usually continue doing it.

And I guess the argument that the genes for white skin are 8,000 years old is going to gain no traction whatsoever with the people who believe that the Earth is 6,000 years old.

But still, it'd be nice, wouldn't it?  Just as the first photographs of the Earth taken from the Moon changed a lot of folks' perspective on our place in the universe, it'd be wonderful if research like this could alter us from "those people... they're not like us" to "we're all one family, and we're all in this together."